Package: SITH
Type: Package
Title: A Spatial Model of Intra-Tumor Heterogeneity
Version: 1.1.0
Date: 2021-01-03
Author: Phillip B. Nicol
Maintainer: Phillip B. Nicol <philnicol740@gmail.com>
Description: Implements a three-dimensional stochastic model of cancer
        growth and mutation similar to the one described in Waclaw et
        al. (2015) <doi:10.1038/nature14971>. Allows for interactive 3D
        visualizations of the simulated tumor. Provides a comprehensive
        summary of the spatial distribution of mutants within the
        tumor. Contains functions which create synthetic sequencing
        datasets from the generated tumor.
License: GPL (>= 2)
Depends: R (>= 3.6.0)
Imports: Rcpp (>= 1.0.4), scatterplot3d, stats, graphics, grDevices
Suggests: rgl, igraph, knitr, rmarkdown, testthat
LinkingTo: Rcpp
RoxygenNote: 7.1.1
VignetteBuilder: knitr
Encoding: UTF-8
URL: https://github.com/phillipnicol/SITH
BugReports: https://github.com/phillipnicol/SITH/issues
Repository: https://phillipnicol.r-universe.dev
Date/Publication: 2024-04-02 15:01:03 UTC
RemoteUrl: https://github.com/phillipnicol/sith
RemoteRef: HEAD
RemoteSha: ac69cfbbd367d0037bc06409d5f68d3369642f4f
NeedsCompilation: yes
Packaged: 2026-10-11 07:58:35 UTC; root